Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161988Uncharacterized protein. (733 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.857
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.857
fau
40S ribosomal protein S30.
   
  0.640
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.589
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.589
commd4
COMM domain containing 4.
    
  0.537
ccdc22
Coiled-coil domain containing 22.
     
  0.532
LOC101161115
TIP120 domain-containing protein.
     
  0.511
cand1
Cullin-associated and neddylation-dissociated 1.
     
  0.511
LOC101160447
RAN binding protein 2.
   
  0.504
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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