STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ufd1Ubiquitin recognition factor in ER associated degradation 1. (310 aa)    
Predicted Functional Partners:
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.999
ubxn7
UBX domain protein 7.
   
 0.999
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 0.998
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.994
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.985
faap100
Si:dkey-57h18.1.
   
 0.984
faf2
Fas associated factor family member 2.
    
 
 0.983
vcpip1
Valosin containing protein (p97)/p47 complex interacting protein 1.
    
 
 0.980
nsfl1c
NSFL1 (p97) cofactor (p47).
   
 
 0.973
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
   
 0.970
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.