STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmub2Transmembrane and ubiquitin-like domain containing 2. (327 aa)    
Predicted Functional Partners:
tmub1
Transmembrane and ubiquitin-like domain containing 1.
    
   0.907
tmem259
Transmembrane protein 259.
    
 
 0.852
LOC101166981
ER lipid raft associated 1.
    
 
 0.777
LOC101158114
ER lipid raft associated 2.
    
 
 0.777
c1h6orf120
Zgc:77929.
      
 0.715
LOC101162541
Ring finger protein 170.
    
 
 0.685
RNF5
Ring finger protein 5.
    
 
 0.650
rnf185
Ring finger protein 185.
    
 
 0.650
tmem53
Transmembrane protein 53.
   
  
 0.621
gemin4
Gem (nuclear organelle) associated protein 4.
      
 0.612
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.