STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmub2Transmembrane and ubiquitin-like domain containing 2. (327 aa)    
Predicted Functional Partners:
LOC101174670
Ankyrin repeat and SOCS box containing 16.
 
 
   0.582
c1h6orf120
Zgc:77929.
      
 0.558
tmub1
Transmembrane and ubiquitin-like domain containing 1.
  
 
 
0.556
LOC101162541
Ring finger protein 170.
    
 
 0.457
tmem259
Transmembrane protein 259.
    
 
 0.440
LOC101166981
ER lipid raft associated 1.
    
 
 0.433
LOC101158114
ER lipid raft associated 2.
    
 
 0.433
LOC101167500
Myosin, light chain 1, alkali; skeletal, fast.
   
  
 0.430
tmem53
Transmembrane protein 53.
   
  
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.