Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101162866Grainyhead like transcription factor 2. (634 aa)    
Predicted Functional Partners:
LOC101164012
Homeobox B6b.
    
 
 0.573
LOC101155275
Homeobox domain-containing protein.
    
 
 0.573
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
   0.523
rnf2
Ring finger protein 2.
    
 
 0.519
RING1
Ring finger protein 1.
    
 
 0.519
trip13
Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family.
   
   0.512
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 
 0.460
wnt11
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
      
 0.451
trrap
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.431
LOC101169513
LIM domain only 4a.
    
   0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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