STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1011632704F5 domain-containing protein. (120 aa)    
Predicted Functional Partners:
ccdc174
Coiled-coil domain containing 174.
      
 0.599
znf407
Zinc finger protein 407.
     
 0.575
txndc5
Thioredoxin domain containing 5; Belongs to the protein disulfide isomerase family.
    
   0.518
ikzf2
IKAROS family zinc finger 2.
     
 0.504
ENSORLP00000029709
General transcription factor IIIAa.
     
 0.489
abitram
Actin binding transcription modulator.
   
  
 0.483
wdyhv1
WDYHV motif containing 1.
      
 0.472
LOC101163910
Fork-head domain-containing protein.
      
 0.472
arid3a
AT rich interactive domain 3A (BRIGHT-like).
      
 0.467
ccdc181
Coiled-coil domain containing 181.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.