STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174670Ankyrin repeat and SOCS box containing 16. (464 aa)    
Predicted Functional Partners:
lrrc20
Leucine rich repeat containing 20.
   
 0.754
LOC101155758
Uncharacterized protein.
   
 0.727
LOC101161905
Leucine rich repeat containing 14B.
   
  
 0.705
osbpl7
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.698
osbpl6
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.693
osbpl11
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.642
LOC101159345
Leucine rich repeat containing 38b.
    
 0.621
LOC101163722
Leucine rich repeat containing 38a.
    
 0.621
asb12
Ankyrin repeat and SOCS box-containing 12b.
  
 
0.620
tmem38a
Transmembrane protein 38A.
   
  
 0.614
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.