STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FBN1Fibrillin 1. (2879 aa)    
Predicted Functional Partners:
lum
Lumican.
   
 0.662
col6a1
Collagen, type VI, alpha 1.
   
 0.533
MFAP2
Microfibril associated protein 2.
   
 0.521
mmp15
ZnMc domain-containing protein.
   
 0.506
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.495
LOC101155530
Procollagen, type V, alpha 1.
   
 0.492
frem1
Fras1 related extracellular matrix 1a.
    
 0.486
LOC101167732
Microfibril associated protein 5.
   
 0.486
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
col1
Uncharacterized protein.
   
 0.467
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.