Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101163095Cugbp, Elav-like family member 3a. (445 aa)    
Predicted Functional Partners:
tubg1
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
    
   0.520
phkg1
Phosphorylase kinase, gamma 1a (muscle); Belongs to the protein kinase superfamily.
    
   0.475
phkg2
Phosphorylase kinase, gamma 2 (testis); Belongs to the protein kinase superfamily.
    
   0.475
rpe65
Retinoid isomerohydrolase RPE65 a.
      
 0.463
LOC101160403
RNA binding motif protein 38.
  
   
 0.424
LOC101163271
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
  
 0.405
bhlhe22
Basic helix-loop-helix family, member e22.
   
  
 0.404
tubd1
Tubulin, delta 1; Belongs to the tubulin family.
    
 
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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