STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgap42Rho GTPase activating protein 42b. (899 aa)    
Predicted Functional Partners:
SNIP1
Smad nuclear interacting protein 1.
      
 0.664
arhgap10
Rho GTPase activating protein 10.
    
   0.622
dazap1
DAZ associated protein 1.
      
 0.613
c2cd2
C2 calcium dependent domain containing 2.
    
   0.605
CDC42
Cell division cycle 42.
    
 0.524
LOC101164400
Uncharacterized protein.
    
 0.524
LOC101155194
Uncharacterized protein.
    
 0.450
RHOB
Ras homolog family member B.
    
 0.450
LOC101173444
Uncharacterized protein.
    
 0.450
LOC101158607
Uncharacterized protein.
    
 0.450
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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