STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alx1ALX homeobox 1. (326 aa)    
Predicted Functional Partners:
tbx3
T-box transcription factor 3a.
    
 0.709
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.600
fgfr1
Fibroblast growth factor receptor.
   
  
 0.561
Msrb3
Peptide-methionine (R)-S-oxide reductase; Methionine-sulfoxide reductase that specifically reduces methionine (R)-sulfoxide back to methionine. While in many cases methionine oxidation is the result of random oxidation following oxidative stress, methionine oxidation is also a post-translational modification that takes place on specific residues.
      
 0.542
LOC101162163
Collagen, type I, alpha 1b.
     
 0.535
col1
Uncharacterized protein.
     
 0.535
LOC100125511
Metalloendopeptidase.
      
 0.533
pbx3
Homeobox domain-containing protein.
    
 
 0.494
LOC101165017
Cysteine-rich protein 2.
      
 0.491
LOC101159120
Ephrin RBD domain-containing protein; Belongs to the ephrin family.
    
 
 0.485
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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