STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alx1ALX homeobox 1. (326 aa)    
Predicted Functional Partners:
slc12a3
Uncharacterized protein.
    
 
 0.567
SLC16A6
Solute carrier family 16 member 6b.
      
 0.503
pbx3
Homeobox domain-containing protein.
    
 
 0.498
DCDC2
Doublecortin domain containing 2.
      
 0.468
rxfp2
Relaxin family peptide receptor 2a.
   
  
 0.466
LOC101161908
T-box transcription factor 5a.
    
 0.462
tbx15
T-box transcription factor 15.
    
 
 0.459
esr2
Uncharacterized protein.
      
 0.451
LOC101172525
Pre-B-cell leukemia homeobox 2.
    
 
 0.451
tbx3
T-box transcription factor 3a.
   
 0.450
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.