Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101169977Ring finger protein 150b. (446 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
   0.602
ociad2
OCIA domain containing 2.
      
 0.560
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.526
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
 0.526
c2cd2
C2 calcium dependent domain containing 2.
      
 0.498
lias
Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
   
  
 0.485
LOC101174167
Si:dkeyp-86f7.4.
   
 
 0.478
rps27a
Ribosomal protein S27a.
    
 0.477
SYNPO2
Synaptopodin 2.
   
  
 0.468
LOC101156036
Synaptopodin 2-like a.
   
  
 0.468
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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