STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmnb2Lamin B2; Belongs to the intermediate filament family. (579 aa)    
Predicted Functional Partners:
CASP6
Caspase 6; Belongs to the peptidase C14A family.
   
 0.959
H2MXM9_ORYLA
Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
   
 0.942
LOC101158094
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.902
LOC101161875
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.902
LOC101171770
Uncharacterized protein.
   
 0.760
banf1
Barrier to autointegration factor 1.
   
 0.760
sun1
SUN domain-containing protein.
    
 0.742
lemd3
LEM domain containing 3.
   
 0.731
nup153
Nucleoporin 153.
    
 
 0.708
nup62
Nsp1_C domain-containing protein.
   
  
 0.661
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.