Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
H2LBR1_ORYLAUSP domain-containing protein. (354 aa)    
Predicted Functional Partners:
ddx56
DEAD (Asp-Glu-Ala-Asp) box helicase 56.
    
 
 0.575
rps27a
Ribosomal protein S27a.
    
  0.541
psmb1
Proteasome subunit beta.
    
   0.475
Tomm6
Zgc:112163.
      
 0.463
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 
 0.437
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
 
 0.437
ubc
Ubiquitin B.
    
  0.424
mphosph6
M-phase phosphoprotein 6.
     
  0.409
c1d
C1D nuclear receptor corepressor.
     
  0.409
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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