STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc12a1Solute carrier family 12 member 1. (1048 aa)    
Predicted Functional Partners:
LOC101158859
Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.
      
 0.720
LOC101158338
Anion exchange protein.
    
 
 0.668
LOC101167014
Chloride channel K.
   
  
 0.664
LOC101174416
ADP-ribosylation factor 3.
    
 
 0.657
mrpl45
Mitochondrial ribosomal protein L45.
      
 0.642
trpm7
Transient receptor potential cation channel, subfamily M, member 7.
      
 0.546
slc4a3
Anion exchange protein.
    
 
 0.540
arl3
ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.526
LOC101156367
Oxidative stress responsive kinase 1b.
    
 
 0.523
LOC101161509
Oxidative stress responsive kinase 1a.
    
 
 0.523
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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