STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc45Leucine rich repeat containing 45. (668 aa)    
Predicted Functional Partners:
kxd1
KxDL motif containing 1.
    
  0.855
cep164
WW domain-containing protein.
   
 0.706
cntln
Centlein, centrosomal protein.
      
 0.653
sclt1
Sodium channel and clathrin linker 1.
    
 0.633
H2MFT6_ORYLA
Uncharacterized protein.
   
   0.629
cep83
Centrosomal protein 83.
    
 0.623
fbf1
Uncharacterized protein.
   
  
 0.612
cep89
Uncharacterized protein.
     
 0.602
anks3
Ankyrin repeat and sterile alpha motif domain containing 3.
   
  0.588
CROCC
Ciliary rootlet coiled-coil, rootletin.
    
 
 0.576
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.