Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167736Kirre like nephrin family adhesion molecule 1b. (806 aa)    
Predicted Functional Partners:
nphs1
NPHS1 adhesion molecule, nephrin.
   
 0.903
nck1
Cytoplasmic protein.
    
 0.609
nck2
Cytoplasmic protein.
    
 0.609
LOC101160233
Tight junction protein 1b; Belongs to the MAGUK family.
    
 
 0.553
LOC101166369
Tight junction protein 1a; Belongs to the MAGUK family.
    
 
 0.553
sms
Spermine synthase.
      
 0.481
LOC101166708
NPHS2 stomatin family member, podocin.
    
 0.437
LOC101155365
Tyrosine-protein kinase.
    
  0.404
LOC101169671
Tyrosine-protein kinase.
    
  0.404
LOC101169425
Tyrosine-protein kinase.
    
  0.404
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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