STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LBV2_ORYLARRM domain-containing protein. (120 aa)    
Predicted Functional Partners:
srsf10
Serine and arginine rich splicing factor 10.
   
 0.856
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.853
LOC101155103
Uncharacterized protein.
   
 
 0.843
LOC101167788
RNA binding motif protein 39b.
   
 
 0.843
pnisr
PNN-interacting serine/arginine-rich protein.
   
 
 0.842
zranb2
Zinc finger, RAN-binding domain containing 2.
   
 0.833
LOC101163660
RRM domain-containing protein.
   
 0.815
LOC100049528
Serine and arginine rich splicing factor 2a.
   
 0.815
H2MT00_ORYLA
PWI domain-containing protein.
   
 0.799
LOC101155211
Serine and arginine rich splicing factor 7a.
   
 0.792
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.