Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
tmem115Transmembrane protein 115. (383 aa)    
Predicted Functional Partners:
mul1
Mitochondrial E3 ubiquitin protein ligase 1b.
   
    0.779
ubl7
Ubiquitin-like 7b (bone marrow stromal cell-derived).
      
 0.761
ccdc25
Coiled-coil domain containing 25.
      
 0.738
tmem184a
Transmembrane protein 184a.
      
 0.737
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
      
 0.722
tmem135
Transmembrane protein 135.
      
 0.711
dctn4
Dynactin 4.
     
  0.670
Depdc5
Uncharacterized protein.
     
  0.656
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
     
  0.648
cog2
Component of oligomeric golgi complex 2.
   
 
  0.640
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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