ninl protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

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[Homology]

Score

ninl

Ninein-like. (1220 aa)

Predicted Functional Partners:

LOC101162870

0.880

LOC101166919

0.880

H2LDV5_ORYLA

0.770

lca5

0.718

tubg1

0.688

LOC101160447

0.639

ubr3

0.638

plk2

0.634

plk3

0.634

PLK1

0.634

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LDV5_ORYLA	LOC101160447	ENSORLP00000004119	ENSORLP00000038127	Uncharacterized protein.	RAN binding protein 2.	0.603
H2LDV5_ORYLA	PLK1	ENSORLP00000004119	ENSORLP00000041081	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.760
H2LDV5_ORYLA	ninl	ENSORLP00000004119	ENSORLP00000003401	Uncharacterized protein.	Ninein-like.	0.770
H2LDV5_ORYLA	plk2	ENSORLP00000004119	ENSORLP00000005969	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.760
H2LDV5_ORYLA	plk3	ENSORLP00000004119	ENSORLP00000020302	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.760
H2LDV5_ORYLA	tubg1	ENSORLP00000004119	ENSORLP00000005556	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.471
LOC101160447	H2LDV5_ORYLA	ENSORLP00000038127	ENSORLP00000004119	RAN binding protein 2.	Uncharacterized protein.	0.603
LOC101160447	PLK1	ENSORLP00000038127	ENSORLP00000041081	RAN binding protein 2.	Serine/threonine-protein kinase PLK.	0.718
LOC101160447	ninl	ENSORLP00000038127	ENSORLP00000003401	RAN binding protein 2.	Ninein-like.	0.639
LOC101160447	plk2	ENSORLP00000038127	ENSORLP00000005969	RAN binding protein 2.	Serine/threonine-protein kinase PLK.	0.718
LOC101160447	plk3	ENSORLP00000038127	ENSORLP00000020302	RAN binding protein 2.	Serine/threonine-protein kinase PLK.	0.718
LOC101162870	LOC101166919	ENSORLP00000031330	ENSORLP00000037337	Dynactin 1a.	Dynactin 1b.	0.901
LOC101162870	PLK1	ENSORLP00000031330	ENSORLP00000041081	Dynactin 1a.	Serine/threonine-protein kinase PLK.	0.640
LOC101162870	ninl	ENSORLP00000031330	ENSORLP00000003401	Dynactin 1a.	Ninein-like.	0.880
LOC101162870	plk2	ENSORLP00000031330	ENSORLP00000005969	Dynactin 1a.	Serine/threonine-protein kinase PLK.	0.640
LOC101162870	plk3	ENSORLP00000031330	ENSORLP00000020302	Dynactin 1a.	Serine/threonine-protein kinase PLK.	0.640
LOC101166919	LOC101162870	ENSORLP00000037337	ENSORLP00000031330	Dynactin 1b.	Dynactin 1a.	0.901
LOC101166919	PLK1	ENSORLP00000037337	ENSORLP00000041081	Dynactin 1b.	Serine/threonine-protein kinase PLK.	0.640
LOC101166919	ninl	ENSORLP00000037337	ENSORLP00000003401	Dynactin 1b.	Ninein-like.	0.880
LOC101166919	plk2	ENSORLP00000037337	ENSORLP00000005969	Dynactin 1b.	Serine/threonine-protein kinase PLK.	0.640