STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ninlNinein-like. (1220 aa)    
Predicted Functional Partners:
LOC101162870
Dynactin 1a.
    
 
 0.579
LOC101166919
Dynactin 1b.
    
 
 0.579
H2LDV5_ORYLA
Uncharacterized protein.
    
 0.569
lca5
Lebercilin LCA5.
      
 0.559
LOC101160447
RAN binding protein 2.
   
 0.521
bicdl1
BICD family like cargo adaptor 1.
      
 0.504
plk2
Serine/threonine-protein kinase PLK.
   
 0.491
plk3
Serine/threonine-protein kinase PLK.
   
 0.491
PLK1
Serine/threonine-protein kinase PLK.
   
 0.491
ND4
NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
    
 
 0.481
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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