STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
myef2Myelin expression factor 2. (571 aa)    
Predicted Functional Partners:
CTXN2
Cortexin 2.
    
 
 0.847
H2LC37_ORYLA
Uncharacterized protein.
   
 0.787
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.752
slc24a5
Solute carrier family 24 member 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
   
  
 0.690
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
    
 
 0.680
ttll12
Tubulin tyrosine ligase-like family, member 12.
      
 0.651
LOC101169560
Transient receptor potential cation channel, subfamily V, member 6; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.611
edf1
Endothelial differentiation-related factor 1.
   
  
 0.567
LOC101169363
Calcium regulated heat stable protein 1.
   
 0.557
snw1
SNW domain containing 1.
    
 
 0.553
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.