STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myef2Myelin expression factor 2. (571 aa)    
Predicted Functional Partners:
xab2
XPA binding protein 2.
   
 0.722
H2LC37_ORYLA
Uncharacterized protein.
   
 0.718
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 0.706
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.698
isy1
ISY1 splicing factor homolog.
   
 0.696
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
  
0.680
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
    
 0.677
ccdc12
Coiled-coil domain containing 12.
    
 0.650
cwf19l2
CWF19 like cell cycle control factor 2.
    
  0.639
fau
40S ribosomal protein S30.
   
 0.629
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.