Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167488ATP-binding cassette, sub-family G (WHITE), member 2a. (654 aa)    
Predicted Functional Partners:
LOC101164130
ATP-binding cassette, sub-family G (WHITE), member 2c.
  
  
0.908
LOC101170649
ATP-binding cassette, sub-family G (WHITE), member 2d.
  
  
 
0.901
abcg5
ATP-binding cassette, sub-family G (WHITE), member 5.
   
 0.765
LOC101162066
Uncharacterized protein.
  
 0.759
LOC101165337
Uncharacterized protein.
  
 0.759
abcc3
ATP-binding cassette, sub-family C (CFTR/MRP), member 3.
  
 0.674
abcc12
ATP-binding cassette, sub-family C (CFTR/MRP), member 12.
  
 0.620
ABCC4
ATP binding cassette subfamily C member 4.
  
 0.610
LOC101159411
ATP-binding cassette, sub-family C (CFTR/MRP), member 4.
  
 0.610
LOC101158001
ATP-binding cassette, sub-family C (CFTR/MRP), member 6a.
  
 0.583
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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