STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162874Phospholipase B-like; Putative phospholipase. (542 aa)    
Predicted Functional Partners:
pla2g4a
Phospholipase A2.
     
 0.600
aplp2
Amyloid beta (A4) precursor-like protein 2.
      
 0.562
LOC101166499
Profilin; Belongs to the profilin family.
      
 0.495
LOC101165394
GRB2 related adaptor protein 2a.
      
 0.464
gipc3
GIPC PDZ domain containing family, member 3.
      
 0.431
agmat
Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.
      
 0.430
LOC101160143
Uncharacterized protein.
      
 0.425
LOC101171906
Golgi glycoprotein 1a.
      
 0.425
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.