STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164300RNA pseudouridine synthase D4. (407 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 0.917
ngrn
Neugrin, neurite outgrowth associated.
   
 0.912
trub2
TruB pseudouridine (psi) synthase family member 2.
  
 0.902
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
  
 
 0.879
rcc1l
RCC1 like.
    
 0.841
pus7
Pseudouridine synthase 7.
   
 
 0.835
mrm3
Mitochondrial rRNA methyltransferase 3a.
  
 
 0.814
pus7l
Pseudouridine synthase 7 like.
   
 
 0.807
malsu1
Uncharacterized protein.
  
 
 0.805
mterf3
Mitochondrial transcription termination factor 3.
   
 0.758
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.