STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174167Si:dkeyp-86f7.4. (361 aa)    
Predicted Functional Partners:
otub1
Ubiquitin thioesterase.
    
 0.973
LOC101163349
Retinal outer segment membrane protein 1a.
    
 
 0.913
s100z
Protein S100; Belongs to the S-100 family.
      
 0.911
LOC101171662
PNPLA domain-containing protein.
      
 0.910
usp8
Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.
    
 0.781
LOC101171355
Uncharacterized protein.
    
 
 0.768
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
    
 0.729
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
      
 0.717
prph2
Peripherin 2a (retinal degeneration, slow).
    
 
 0.705
dusp6
Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
      
 0.700
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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