Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC101168985Testis associated actin remodelling kinase 2. (490 aa)    
Predicted Functional Partners:
spry4
Sprouty homolog 4 (Drosophila).
    
 0.709
parvb
Parvin, beta.
     
 0.579
LOC101161694
Parvin, alpha a.
     
 0.579
traf7
TNF receptor-associated factor 7.
   
 0.541
gak
Cyclin G associated kinase.
    
 0.536
LOC101159762
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
 0.517
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.469
LOC101167979
Uncharacterized protein.
    
 0.441
LOC101169661
Pellino E3 ubiquitin protein ligase 1.
    
 0.441
LOC101167088
Uncharacterized protein.
    
 0.441
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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