H2LC37_ORYLA protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2LC37_ORYLA

Uncharacterized protein. (66 aa)

Predicted Functional Partners:

polr1b

0.999

polr2g

0.999

twistnb

0.999

polr2d

0.999

polr1a

0.999

LOC101162457

0.999

polr3b

0.999

polr3h

0.999

polr2f

0.999

polr2c

0.999

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LC37_ORYLA	LOC101162457	ENSORLP00000003471	ENSORLP00000012857	Uncharacterized protein.	RNA polymerase I and III subunit D.	0.999
H2LC37_ORYLA	polr1a	ENSORLP00000003471	ENSORLP00000010996	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H2LC37_ORYLA	polr1b	ENSORLP00000003471	ENSORLP00000001089	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H2LC37_ORYLA	polr2c	ENSORLP00000003471	ENSORLP00000018932	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.999
H2LC37_ORYLA	polr2d	ENSORLP00000003471	ENSORLP00000006639	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.999
H2LC37_ORYLA	polr2f	ENSORLP00000003471	ENSORLP00000018281	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.999
H2LC37_ORYLA	polr2g	ENSORLP00000003471	ENSORLP00000003930	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.999
H2LC37_ORYLA	polr3b	ENSORLP00000003471	ENSORLP00000013878	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H2LC37_ORYLA	polr3h	ENSORLP00000003471	ENSORLP00000017761	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide H.	0.999
H2LC37_ORYLA	twistnb	ENSORLP00000003471	ENSORLP00000005003	Uncharacterized protein.	TWIST neighbor.	0.999
LOC101162457	H2LC37_ORYLA	ENSORLP00000012857	ENSORLP00000003471	RNA polymerase I and III subunit D.	Uncharacterized protein.	0.999
LOC101162457	polr1a	ENSORLP00000012857	ENSORLP00000010996	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
LOC101162457	polr1b	ENSORLP00000012857	ENSORLP00000001089	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
LOC101162457	polr2c	ENSORLP00000012857	ENSORLP00000018932	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.998
LOC101162457	polr2d	ENSORLP00000012857	ENSORLP00000006639	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.706
LOC101162457	polr2f	ENSORLP00000012857	ENSORLP00000018281	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.999
LOC101162457	polr2g	ENSORLP00000012857	ENSORLP00000003930	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.616
LOC101162457	polr3b	ENSORLP00000012857	ENSORLP00000013878	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
LOC101162457	polr3h	ENSORLP00000012857	ENSORLP00000017761	RNA polymerase I and III subunit D.	Polymerase (RNA) III (DNA directed) polypeptide H.	0.999
LOC101162457	twistnb	ENSORLP00000012857	ENSORLP00000005003	RNA polymerase I and III subunit D.	TWIST neighbor.	0.999