STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc9cTetratricopeptide repeat domain 9C. (219 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.871
ttc26
Tetratricopeptide repeat domain 26.
   
 0.700
bbs7
Bardet-Biedl syndrome 7.
   
 0.652
bbs9
Bardet-Biedl syndrome 9.
    
 0.637
Tep1
Uncharacterized protein.
   
 0.620
ENSORLP00000040907
TROVE domain-containing protein.
   
 0.620
ENSORLP00000041818
Uncharacterized protein.
   
 0.620
anapc16
Anaphase promoting complex subunit 16.
    
 0.619
ruvbl2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 
 0.616
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
   
 0.615
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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