Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
tmem98Transmembrane protein 98. (224 aa)    
Predicted Functional Partners:
prss56
Serine protease 56; Belongs to the peptidase S1 family.
      
 0.902
myrf
Myelin regulatory factor.
    
 
 0.696
mfrp
Membrane frizzled-related protein.
      
 0.687
LOC105354787
Vesicle-associated membrane protein 8 (endobrevin).
    
   0.672
sh3rf1
SH3 domain containing ring finger 1.
      
 0.617
LOC101167866
Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family.
      
 0.615
tmem170b
Transmembrane protein 170B.
      
 0.608
LOC101160164
Dehydrogenase/reductase (SDR family) member 7Ca.
      
 0.593
dhrs7c
Dehydrogenase/reductase (SDR family) member 7Cb.
      
 0.593
fbxl16
F-box and leucine-rich repeat protein 16.
      
 0.591
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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