Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIPAL2NIPA like domain containing 2. (359 aa)    
Predicted Functional Partners:
MATN2
Matrilin 2.
      
 0.827
LOC101173474
Serine dehydratase.
      
 0.616
SDS
Serine dehydratase.
      
 0.616
nme6
Nucleoside diphosphate kinase.
      
 0.613
txndc16
Thioredoxin domain containing 16.
      
 0.604
stxbp4
Syntaxin binding protein 4.
      
 0.589
khk
Ketohexokinase.
      
 0.565
H2M3F5_ORYLA
BTB domain-containing protein.
      
 0.501
tm2d1
TM2 domain containing 1.
      
 0.467
mrpl53
Mitochondrial ribosomal protein L53.
      
 0.463
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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