STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rassf2Ras association domain family member 2a. (323 aa)    
Predicted Functional Partners:
eif5b
Eukaryotic translation initiation factor 5B.
    
 
 0.793
rassf5
Ras association domain family member 5.
    
 
 0.735
ACSF3
Acyl-CoA synthetase family member 3.
      
 0.715
ppp1r13b
Protein phosphatase 1, regulatory subunit 13Bb.
      
 0.705
LOC101175466
Uncharacterized protein.
   
 0.704
LOC101155570
Serine/threonine kinase 3 (STE20 homolog, yeast).
   
 0.704
emb
Embigin.
   
   0.603
sav1
Salvador family WW domain containing protein 1.
    
 
 0.576
pcsk1
Proprotein convertase subtilisin/kexin type 1; Belongs to the peptidase S8 family.
      
 0.563
LOC101161187
P/Homo B domain-containing protein; Belongs to the peptidase S8 family.
      
 0.563
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.