Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stk25Serine/threonine kinase 25b. (434 aa)    
Predicted Functional Partners:
pdcd10
Programmed cell death 10b.
   
 
 0.839
LOC101160676
TAO kinase 3b.
 
  
   0.772
lrsam1
Leucine rich repeat and sterile alpha motif containing 1.
   
 
 0.767
LOC110014886
MOB family member 4, phocein.
    
 
 0.745
LOC101167061
Protein phosphatase 2, regulatory subunit A, beta b.
   
 
 0.686
slmap
Sarcolemma associated protein a.
    
 
 0.682
strip1
Striatin interacting protein 1.
    
 
 0.660
traf3ip3
Uncharacterized protein.
    
 
 0.648
cct7
T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
    
   0.627
LOC101155981
Striatin, calmodulin binding protein.
    
 
 0.627
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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