STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168381Neurocalcin delta b. (192 aa)    
Predicted Functional Partners:
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.686
cask
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.686
pi4kb
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.637
LOC101161567
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
    
 
 0.637
ntsr1
Neurotensin receptor 1 (high affinity); Belongs to the G-protein coupled receptor 1 family.
   
 0.620
lrrtm1
Leucine rich repeat transmembrane neuronal 1.
   
 0.619
LOC101170994
Uncharacterized protein.
      
 0.600
LOC101164503
Ataxin 1b.
   
  
 0.588
chp1
Calcineurin-like EF-hand protein 1.
    
 
 0.587
calm3
Calmodulin-A; Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
    
0.494
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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