STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctnsCystinosin, lysosomal cystine transporter. (498 aa)    
Predicted Functional Partners:
slc66a1
Solute carrier family 66 member 1.
    
 
 0.672
LOC101175200
IL6Ra-bind domain-containing protein.
      
 0.669
shpk
Sedoheptulokinase.
   
  
 0.667
btg3
B-cell translocation gene 3.
      
 0.627
cln3
Battenin.
   
  
 0.571
idua
Iduronidase alpha-L-.
   
  
 0.483
dr1
Down-regulator of transcription 1.
      
 0.424
LOC101175396
Si:dkey-246g23.2.
    
 
 0.415
SLC66A2
Solute carrier family 66 member 2.
    
 
 0.415
mfsd12
Major facilitator superfamily domain containing 12a.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.