STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plcd3Phosphoinositide phospholipase C. (790 aa)    
Predicted Functional Partners:
ipmk
Kinase; Belongs to the inositol phosphokinase (IPK) family.
    
 0.935
Itpr2
Inositol 1,4,5-trisphosphate receptor, type 2.
   
 
 0.928
LOC101167700
Inositol 1,4,5-trisphosphate receptor, type 1a.
   
 
 0.928
INPP5A
Inositol polyphosphate-5-phosphatase A.
   
 
 0.912
cdipt
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
     
 0.906
LOC101172268
Multiple inositol-polyphosphate phosphatase 1a; Belongs to the histidine acid phosphatase family.
     
  0.900
pikfyve
Phosphoinositide kinase, FYVE finger containing.
     
 0.900
mtm1
Myotubularin 1.
     
 0.900
inpp1
Si:ch211-160o17.2.
     
  0.900
pip5k1c
Phosphatidylinositol-4-phosphate 5-kinase, type I, gamma a.
   
 0.800
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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