STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LCJ5_ORYLAGliomedin. (391 aa)    
Predicted Functional Partners:
tnfaip8l3
Tumor necrosis factor, alpha-induced protein 8-like 3.
   
  
 0.798
LOC101164207
Uncharacterized protein.
      
 0.698
nfasc
Neurofascin homolog (chicken) a.
      
 0.675
tax1bp1
Tax1 (human T-cell leukemia virus type I) binding protein 1b.
     
 0.622
tnn
Tenascin N.
      
 0.604
VANGL1
VANGL planar cell polarity protein 1.
      
 0.576
LOC101170632
Vang-like protein.
      
 0.576
wdr89
WD repeat domain 89.
      
 0.507
lrrc4c
Leucine rich repeat containing 4C, genome duplicate b.
    
 
 0.502
ankrd1
Ankyrin repeat domain 1a (cardiac muscle).
    
 
 0.500
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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