STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl22l1Ribosomal protein L22-like 1. (126 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
 0.994
rpl21
Ribosomal protein L21.
   
 0.983
rpl31
Ribosomal protein L31.
   
 0.982
rpl27
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
   
 0.981
ENSORLP00000035584
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.981
rpl4
Ribosomal protein L4.
   
 0.980
rpl30
Ribosomal protein L30.
   
 0.980
rpl32
Ribosomal protein L32.
   
 0.980
rpl14
Ribosomal protein L14.
   
 0.980
rpl29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.980
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.