close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160304Calreticulin. (415 aa)    
Predicted Functional Partners:
tapbp
Uncharacterized protein.
    
 0.987
pdia3
Protein disulfide-isomerase.
   
 0.978
LOC101165241
Protein disulfide-isomerase.
   
 0.959
abcb3
Uncharacterized protein.
   
 0.935
LOC101165513
Transporter associated with antigen processing, subunit type t, teleost specific.
   
 0.935
tap1
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
   
 0.935
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 0.924
LOC101169735
Calreticulin.
  
  
 
0.901
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 0.890
pdia4
Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family.
   
 0.848
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.