Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLC15A1Solute carrier family 15 member 1b. (732 aa)    
Predicted Functional Partners:
CXorf21
Chromosome X open reading frame 21.
    
 0.751
slc3a1
Solute carrier family 3 member 1.
   
 
 0.673
LOC101173215
Metalloendopeptidase.
   
  
 0.624
mep1b
Meprin A subunit.
   
  
 0.622
LOC101174455
Zgc:171592; Belongs to the peptidase S1 family.
   
  
 0.617
LOC101169713
Biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino.
   
  
 0.608
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
      
 0.597
slc39a13
Solute carrier family 39 member 13.
    
 
 0.584
bms1
BMS1 ribosome biogenesis factor.
      
 0.553
pola1
DNA polymerase.
      
 0.526
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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