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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC15A1Solute carrier family 15 member 1b. (732 aa)    
Predicted Functional Partners:
slc3a1
Solute carrier family 3 member 1.
   
 
 0.604
slc26a6
Solute carrier family 26 member 6.
  
 
 0.562
LOC101169713
Biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino.
   
  
 0.536
bloc1s6
Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. In concert with the AP-3 complex, the BLOC-1 complex is required to target membrane protein cargos into vesicles assembled at cell bodies for delivery into neurites and nerve terminals. The BLOC-1 complex, in association with SNARE proteins, is also proposed to be involved in neurite extension. May play a role in intracellular vesicle trafficking, particular [...]
      
 0.515
bloc1s1
Biogenesis of lysosomal organelles complex-1, subunit 1.
      
 0.503
LOC101173215
Metalloendopeptidase.
   
  
 0.499
mep1b
Meprin A subunit.
   
  
 0.492
LOC101174455
Zgc:171592; Belongs to the peptidase S1 family.
   
  
 0.491
HBE1
Hemoglobin subunit epsilon 1; Belongs to the globin family.
      
 0.443
slc39a13
Solute carrier family 39 member 13.
    
 
 0.431
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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