Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pex19Peroxisomal biogenesis factor 19. (312 aa)    
Predicted Functional Partners:
pex3
Peroxisomal biogenesis factor 3.
   
 0.999
abcd3
ATP-binding cassette, sub-family D (ALD), member 3a.
    
 0.998
pex16
Peroxisomal membrane protein PEX16.
    
 0.998
pex14
Peroxisomal biogenesis factor 14.
   
 0.998
pex13
Peroxisomal biogenesis factor 13.
    
 0.997
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
    
 0.997
pex10
Peroxisomal biogenesis factor 10.
    
 
 0.981
Pex2
Peroxisomal biogenesis factor 2.
    
 0.979
pxmp2
Peroxisomal membrane protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family.
    
 0.978
pex6
Peroxisomal biogenesis factor 6.
    
 0.966
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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