STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shld2Si:ch211-134m17.9. (721 aa)    
Predicted Functional Partners:
LOC110015669
Uncharacterized protein.
    
 
 0.941
ENSORLP00000033799
Uncharacterized protein.
  
   
 0.634
Rif1
Uncharacterized protein.
    
 
 0.561
rev3l
REV3 like, DNA directed polymerase zeta catalytic subunit.
      
 0.485
ENSORLP00000027136
Uncharacterized protein.
      
 0.485
tp53bp1
Tumor protein p53 binding protein, 1.
    
 
 0.468
kiz
Kizuna centrosomal protein.
      
 0.457
COPS6
COP9 signalosome subunit 6.
      
 0.446
rfwd3
Ring finger and WD repeat domain 3.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.