STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c9Complement component 9. (586 aa)    
Predicted Functional Partners:
c7
Complement component 7a.
   
0.998
C8A
Complement C8 alpha chain.
   
0.998
c6
Complement component 6.
   
0.998
c5
Uncharacterized protein.
   
 0.996
c8g
Complement component 8, gamma polypeptide; Belongs to the calycin superfamily. Lipocalin family.
   
 0.954
c8b
Complement component 8, beta polypeptide.
   
 
0.916
LOC101174608
Complement component 7b.
     
 
0.900
fga
Fibrinogen alpha chain.
   
  
 0.752
LOC101161673
Apolipoprotein Eb.
    
 
 0.730
LOC101157076
Vitronectin b.
   
 
 0.714
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.