Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H2LCR5_ORYLAGrowth arrest-specific 1b. (236 aa)    
Predicted Functional Partners:
ptch1
Patched 1.
     
 0.971
ptch2
Patched 2.
     
 0.971
boc
BOC cell adhesion associated, oncogene regulated.
    
 0.940
cdon
Cell adhesion associated, oncogene regulated.
    
 0.940
LOC101160152
Uncharacterized protein.
  
  
 
0.905
LOC101170159
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.902
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.902
lrp2
Low density lipoprotein receptor-related protein 2a.
     
 0.902
gas1
Growth arrest-specific 1a.
  
  
 
0.902
LOC100125500
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.902
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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