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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrtfbMyocardin related transcription factor Ba. (1052 aa)    
Predicted Functional Partners:
LOC105358811
MADS-box domain-containing protein.
    
 0.823
srf
Serum response factor b.
    
 0.817
LOC101155032
Envoplakin b.
   
  
 0.577
map2k4
Mitogen-activated protein kinase kinase 4; Belongs to the protein kinase superfamily.
   
 0.567
LOC101161098
Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily.
   
 0.567
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.565
LOC101155936
NBR1 autophagy cargo receptor b.
    
 0.531
nbr1
NBR1 autophagy cargo receptor a.
    
 0.531
scai
Suppressor of cancer cell invasion.
   
 
  0.515
map2k5
Mitogen-activated protein kinase kinase 5; Belongs to the protein kinase superfamily.
   
 0.506
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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