STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161165Phosphoethanolamine methyltransferase. (492 aa)    
Predicted Functional Partners:
H2N0C8_ORYLA
Cytochrome P450, family 51; Belongs to the cytochrome P450 family.
   
 
 0.976
sc5d
Sterol-C5-desaturase; Belongs to the sterol desaturase family.
   
 
 0.970
sigmar1
Sigma non-opioid intracellular receptor 1.
   
 0.963
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
   
 0.951
LOC101162151
Phosphate cytidylyltransferase 1, choline, beta b.
    
 0.946
pcyt1b
Phosphate cytidylyltransferase 1, choline, beta a.
    
 0.946
pcyt1a
Phosphate cytidylyltransferase 1, choline, alpha a.
    
 0.946
ERG28
Ergosterol biosynthesis 28 homolog.
   
 
 0.937
LOC101159912
Choline kinase beta.
    
 0.934
LOC101161031
Choline kinase alpha.
    
 0.934
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.