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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162518Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (204 aa)    
Predicted Functional Partners:
fn1
Fibronectin-1.
     
 0.945
thbs2
Thrombospondin 2a.
    
 0.912
thbs1
Uncharacterized protein.
    
 0.912
LOC100302438
Thrombospondin 1b.
    
 0.912
LOC101168881
Thrombospondin 4b.
    
  0.906
comp
Cartilage oligomeric matrix protein.
    
  0.906
LOC101162687
Thrombospondin 4a.
    
  0.906
LOC101163438
Thrombospondin 3a.
    
  0.906
ENSORLP00000030318
Uncharacterized protein.
    
  0.906
H2LRH6_ORYLA
Uncharacterized protein.
     
  0.901
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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