STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scg3Secretogranin III. (487 aa)    
Predicted Functional Partners:
scg5
Secretogranin V.
   
  
 0.800
LOC101172108
Secretogranin II (chromogranin C), b.
   
  
 0.751
chga
Uncharacterized protein.
   
  
 0.711
cpe
Carboxypeptidase E.
   
  
 0.685
LOC101167327
FAM20C golgi associated secretory pathway kinase.
    
  0.552
LOC101163577
FAM20C golgi associated secretory pathway kinase a.
    
  0.552
gmnn
Uncharacterized protein.
      
 0.540
mia
MIA SH3 domain containing.
      
 0.540
rps14
Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
      
 0.534
LOC101158966
B-cell translocation gene 4.
      
 0.514
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.