STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scg3Secretogranin III. (487 aa)    
Predicted Functional Partners:
scg5
Secretogranin V.
   
  
 0.906
chga
Uncharacterized protein.
   
  
 0.821
LOC101172108
Secretogranin II (chromogranin C), b.
   
 
 0.812
cpe
Carboxypeptidase E.
   
  
 0.699
scg2
Uncharacterized protein.
   
 
 0.663
LOC101167327
FAM20C golgi associated secretory pathway kinase.
    
  0.619
LOC101163577
FAM20C golgi associated secretory pathway kinase a.
    
  0.619
disp2
Dispatched homolog 2 (Drosophila).
   
  
 0.540
LOC110015368
Family with sequence similarity 20 member C, like.
    
  0.533
LOC101164404
Fam20C domain-containing protein.
    
  0.533
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.