Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168145Visual system homeobox 1 homolog, chx10-like. (367 aa)    
Predicted Functional Partners:
atoh7
Atonal bHLH transcription factor 7.
      
 0.706
foxn4
Forkhead box N4.
      
 0.580
bhlhe23
Basic helix-loop-helix family, member e23.
   
  
 0.566
isl1
Uncharacterized protein.
   
  
 0.560
cabp5
Calcium binding protein 5a.
      
 0.560
pou4f2
POU domain protein.
   
  
 0.558
ptf1a
Pancreas associated transcription factor 1a.
      
 0.554
tomm34
Translocase of outer mitochondrial membrane 34.
      
 0.529
lnx2
Ligand of numb-protein X 2a.
      
 0.477
LOC101168125
Arrestin 3.
   
  
 0.471
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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