STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cul1Cullin 1b; Belongs to the cullin family. (801 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.999
fbxw11
F-box and WD repeat domain containing 11a.
    
 0.999
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
    
 0.999
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.999
cops5
COP9 signalosome subunit 5.
   
 0.995
ccnf
Cyclin F; Belongs to the cyclin family.
    
 0.992
fbxw8
F-box and WD repeat domain containing 8.
    
 0.991
fbxo4
F-box protein 4.
    
 0.991
rnf7
Ring finger protein 7.
    
 0.991
fbxl17
F-box and leucine-rich repeat protein 17.
   
 0.991
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.