LOC101156981 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101156981

Glycerol-3-phosphate acyltransferase 2, mitochondrial. (799 aa)

Predicted Functional Partners:

LOC101163833

0.959

GPAT4

0.959

gpam

0.958

gpat3

0.953

LOC101167873

0.953

gpd1

0.948

LOC101158855

0.948

LOC101155171

0.948

gk

0.930

gpd2

0.930

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GPAT4	LOC101155171	ENSORLP00000014473	ENSORLP00000039677	PlsC domain-containing protein.	Glycerol-3-phosphate dehydrogenase [NAD(+)].	0.935
GPAT4	LOC101156981	ENSORLP00000014473	ENSORLP00000003752	PlsC domain-containing protein.	Glycerol-3-phosphate acyltransferase 2, mitochondrial.	0.959
GPAT4	LOC101158855	ENSORLP00000014473	ENSORLP00000015568	PlsC domain-containing protein.	Glycerol-3-phosphate dehydrogenase [NAD(+)].	0.935
GPAT4	LOC101163833	ENSORLP00000014473	ENSORLP00000011088	PlsC domain-containing protein.	Glycerol-3-phosphate acyltransferase 4.	0.901
GPAT4	LOC101167873	ENSORLP00000014473	ENSORLP00000045794	PlsC domain-containing protein.	1-acylglycerol-3-phosphate O-acyltransferase 9, like.	0.901
GPAT4	gk	ENSORLP00000014473	ENSORLP00000004075	PlsC domain-containing protein.	Uncharacterized protein; Belongs to the FGGY kinase family.	0.920
GPAT4	gpam	ENSORLP00000014473	ENSORLP00000026369	PlsC domain-containing protein.	Glycerol-3-phosphate acyltransferase 1, mitochondrial.	0.956
GPAT4	gpat3	ENSORLP00000014473	ENSORLP00000034813	PlsC domain-containing protein.	Glycerol-3-phosphate acyltransferase 3.	0.903
GPAT4	gpd1	ENSORLP00000014473	ENSORLP00000008605	PlsC domain-containing protein.	Glycerol-3-phosphate dehydrogenase [NAD(+)].	0.935
GPAT4	gpd2	ENSORLP00000014473	ENSORLP00000028581	PlsC domain-containing protein.	Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).	0.914
LOC101155171	GPAT4	ENSORLP00000039677	ENSORLP00000014473	Glycerol-3-phosphate dehydrogenase [NAD(+)].	PlsC domain-containing protein.	0.935
LOC101155171	LOC101156981	ENSORLP00000039677	ENSORLP00000003752	Glycerol-3-phosphate dehydrogenase [NAD(+)].	Glycerol-3-phosphate acyltransferase 2, mitochondrial.	0.948
LOC101155171	LOC101158855	ENSORLP00000039677	ENSORLP00000015568	Glycerol-3-phosphate dehydrogenase [NAD(+)].	Glycerol-3-phosphate dehydrogenase [NAD(+)].	0.901
LOC101155171	LOC101163833	ENSORLP00000039677	ENSORLP00000011088	Glycerol-3-phosphate dehydrogenase [NAD(+)].	Glycerol-3-phosphate acyltransferase 4.	0.935
LOC101155171	LOC101167873	ENSORLP00000039677	ENSORLP00000045794	Glycerol-3-phosphate dehydrogenase [NAD(+)].	1-acylglycerol-3-phosphate O-acyltransferase 9, like.	0.935
LOC101155171	gk	ENSORLP00000039677	ENSORLP00000004075	Glycerol-3-phosphate dehydrogenase [NAD(+)].	Uncharacterized protein; Belongs to the FGGY kinase family.	0.689
LOC101155171	gpam	ENSORLP00000039677	ENSORLP00000026369	Glycerol-3-phosphate dehydrogenase [NAD(+)].	Glycerol-3-phosphate acyltransferase 1, mitochondrial.	0.948
LOC101155171	gpat3	ENSORLP00000039677	ENSORLP00000034813	Glycerol-3-phosphate dehydrogenase [NAD(+)].	Glycerol-3-phosphate acyltransferase 3.	0.935
LOC101155171	gpd1	ENSORLP00000039677	ENSORLP00000008605	Glycerol-3-phosphate dehydrogenase [NAD(+)].	Glycerol-3-phosphate dehydrogenase [NAD(+)].	0.901
LOC101155171	gpd2	ENSORLP00000039677	ENSORLP00000028581	Glycerol-3-phosphate dehydrogenase [NAD(+)].	Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).	0.855