Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lpar6Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family. (354 aa)    
Predicted Functional Partners:
pusl1
tRNA pseudouridine synthase.
      
 0.633
LOC101167635
Euchromatic histone-lysine N-methyltransferase 1b.
      
 0.613
creld1
Cysteine-rich with EGF-like domains 1b.
      
 0.611
LOC101160439
Ceramide synthase 2b.
      
 0.600
ints11
Integrator complex subunit 11.
      
 0.578
lpar1
Lysophosphatidic acid receptor 1; Belongs to the G-protein coupled receptor 1 family.
      
 0.569
LOC101170562
Uncharacterized protein.
    
 
 0.518
copa
Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
     
 0.511
pds5b
PDS5 cohesin associated factor B.
    
 
 0.508
ptpn1
Tyrosine-protein phosphatase non-receptor type.
      
 0.504
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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